The FDA are at it again, they seem to be on a mission to go after suppliers of probiotics for preterm babies, and have now attacked Abbott. They appear to have demanded that they stop marketing their probiotic product, as it is not an approved medication, and could be considered an adulterated food product that is not GRAS (Generally Regarded As Safe).
I don’t know if it will be possible to get the FDA to back off. They need to realize that all breast-fed babies are already receiving probiotics. In a completely unregulated way. Every baby that gets unpasteurized breast milk is getting some sort of bifidobacteria, and probably lactobacilli, as well.
If breast-milk isn’t GRAS, I don’t know what is!
Bifidobacteria are usually present in fresh breast milk, although sometimes in very small amounts, and mixed with a huge variety of other organisms, the microbiome of milk varies between individuals and varies around the world, and it seems to be changing over time. Even among babies whose mothers’ milk contains few bifidobacteria, the infants become overwhelmingly colonized with bifidobacteria within a few days, for as long as they are breast fed. Babies born by cesarean delivery, and/or who receive antibiotics in the neonatal period, develop a very different microbiome, which I don’t think is too far of a stretch to call “abnormal”; there is an increased frequency and relative abundance of various pathogens, including E. Coli, Klebsiella, and others.
Once a baby is admitted to the NICU, if we consider the preterm at risk of NEC, intestinal bacterial colonization proceeds with the organisms present in the environment, on the equipment, and in their feeds.
I think of administering probiotics, Florababy(TM) in the case of our NICU, as an attempt to push the microbiome towards normality. I know that despite routine administration of probiotics, the microbiome of the babies in my NICU will remain abnormal, and we will still have cases of late-onset sepsis and NEC. Even, occasionally, of sepsis caused by the organisms that we give purposefully. But we cannot avoid giving the babies enteral organisms! They will become colonized whatever we do, and without probiotics the balance will be more towards pathogens.

The best way to nudge the intestinal microbiome towards being normal is to :
- Ensure that all the babies receive unpasteurized mother’s own milk as soon as possible after delivery. There may be additional benefits of using colostrum for the first feeds.
- Avoid antibiotics, or limit them to the fewest babies for the shortest time possible
- Continue to feed with mother’s own milk, or if unavailable/insufficient, use donor human milk
- Administer a high-quality probiotic preparation. My best guess is that it should contain B longum ssp infantis, and at least one other organism, perhaps Lactobacillus rhamnosus
Adding human milk oligosaccharides, HMOs, especially DSLNT (disiallylo-N-tetraose) improves colonization with Bifidobacteria, and further normalises the microbiome. It is fascinating to reflect on the fact that human milk contains oligosaccharides that humans cannot metabolise! They make up a major proportion of the solids in breast milk. Bifidobacteria have a unique pathway, the Fructose-6-Phosphate Phosphoketolase system, that allows them to metabolize those HMOs, and as a result to downregulate inflammation. They create communities in our guts where multiple species co-operate, which has been referred to as “altruistic” behaviour.
In the future, I think that additional specific HMOs will probably be added to my list of microbiome interventions; if the FDA permit it.
One thing we cannot do, and should not try, is to keep the preterm infant’s GI tract sterile. Trying to ensure the most normal possible microbiome is an essential part of care of the extreme preterm. The FDA’s interventions will only ensure that intestinal colonization is more random, with more pathogens, and more cases of NEC will follow. The FDA seem really to want to kill preterm babies. The lack of insight into the impact of this intervention is startling.
As far as I can see, there is no current pathway for the approval of probiotics for administration to preterm infants. It should be a major priority of the FDA to create and facilitate such a pathway, this is an urgent need for preterm babies. And to back off from those who are currently supplying high-quality products in the interim.
Here are some of the references I used for this post.
Nolan LS, et al. The Role of Human Milk Oligosaccharides and Probiotics on the Neonatal Microbiome and Risk of Necrotizing Enterocolitis: A Narrative Review. Nutrients. 2020;12(10).
Egan M, Van Sinderen D. Carbohydrate Metabolism in Bifidobacteria. The Bifidobacteria and Related Organisms. 2018. p. 145-64.
Moossavi S, et al. Composition and Variation of the Human Milk Microbiota Are Influenced by Maternal and Early-Life Factors. Cell Host Microbe. 2019;25(2):324-35 e4.
Henrick BM, et al. Elevated Fecal pH Indicates a Profound Change in the Breastfed Infant Gut Microbiome Due to Reduction of Bifidobacterium over the Past Century. mSphere. 2018;3(2):10.1128/msphere.00041-18.
Kumar H, et al. Distinct Patterns in Human Milk Microbiota and Fatty Acid Profiles Across Specific Geographic Locations. Front Microbiol. 2016;7:1619.
Jeurink PV, et al. Human milk: a source of more life than we imagine. Beneficial microbes. 2013;4(1):17-30.
Biagi E, et al. The Bacterial Ecosystem of Mother’s Milk and Infant’s Mouth and Gut. Front Microbiol. 2017;8:1214.
Notarbartolo V, et al. Composition of Human Breast Milk Microbiota and Its Role in Children’s Health. Pediatr Gastroenterol Hepatol Nutr. 2022;25(3):194-210.
Chang CM, et al. Effects of Probiotics on Gut Microbiomes of Extremely Preterm Infants in the Neonatal Intensive Care Unit: A Prospective Cohort Study. Nutrients. 2022;14(15).
Baucells BJ, et al. Effectiveness of a probiotic combination on the neurodevelopment of the very premature infant. Sci Rep. 2023;13(1):10344.
van Best N, et al. Influence of probiotic supplementation on the developing microbiota in human preterm neonates. Gut Microbes. 2020;12(1):1-16.
Larke JA, et al. Preterm Infant Fecal Microbiota and Metabolite Profiles Are Modulated in a Probiotic Specific Manner. J Pediatr Gastroenterol Nutr. 2022;75(4):535-42.
Saturio S, et al. Role of Bifidobacteria on Infant Health. Microorganisms. 2021;9(12).
Patangia DV, et al. Impact of antibiotics on the human microbiome and consequences for host health. Microbiologyopen. 2022;11(1):e1260.
Murphy K, et al. The Composition of Human Milk and Infant Faecal Microbiota Over the First Three Months of Life: A Pilot Study. Sci Rep. 2017;7:40597.



































